In order to work with imaging data following software tools\nshould be installed:<\/p>\n\n\n\n
MT imzML Converter should be configure prior use. Open Settings dialog using File->Settings menu item and configure path to the ProteoWizard msconvert executable (typically located in C:\/Program Files\/ProteoWizard\/ProteoWizard <version> folder). In case of Waters instrument \u201cUse Waters File Dialog\u201d checkbox should be checked. Resample checkbox should be checked on majority of new instrument. <\/p>\n\n\n\n
Workflow consists of following steps<\/p>\n\n\n\n
Sample data are available for download here<\/a>.<\/p>\n\n\n\n <\/p>\n","protected":false},"excerpt":{"rendered":" In order to work with imaging data following software tools should be installed: ProteoWizard (Windows 64-bit installer (able to convert vendor files) is recommended) MT imzML Converter Imzml visualization tool. For demo we are using DataCube Explorer MT imzML Converter should be configure prior use. Open Settings dialog using File->Settings menu item and configure path to the ProteoWizard msconvert executable (typically located in C:\/Program Files\/ProteoWizard\/ProteoWizard <version> folder). In case of Waters instrument \u201cUse Waters File Dialog\u201d checkbox should be checked.…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1849,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"om_disable_all_campaigns":false,"footnotes":""},"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/pages\/3389"}],"collection":[{"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/comments?post=3389"}],"version-history":[{"count":5,"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/pages\/3389\/revisions"}],"predecessor-version":[{"id":3992,"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/pages\/3389\/revisions\/3992"}],"up":[{"embeddable":true,"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/pages\/1849"}],"wp:attachment":[{"href":"https:\/\/www.apmaldi.com\/main\/wp-json\/wp\/v2\/media?parent=3389"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}General Information<\/h2>\n\n\n\n
Software tools for imzML visualization<\/h2>\n\n\n\n